AG's Documents Section

Welcome to my Documents Section! On this page, you will find useful links to various resources plus some documents I've written in the past few couple of years. Comments/suggestions? Please feel free to drop me a line!

Computing at Indiana University

• Research And Technical Services (For sysadmin type problems/information; IU username and password required!)

• High Performance Computing group (For HPC software support)
  • FAQ on high performance computing
  • Optimization, Porting and Parallelization (Extended Consulting form)
  • Compilers
  • Linkers
  • Subroutine Libraries
  • Programming Tools
  • Parallel Programming
    • MPI Programming Tutorial (Workshop notes - This is MY BABY!)
  • Numerical Programming

• Hydra Project (IU's Condor Cluter - web portal)

• IU Teragrid Homepage
• Local (IU specific) Teragrid Documentation

• IU Knowledge Base

Bioinformatics work related -- (Clustering using BAG, Documentation for scripts written by me, etc.)

• Fasta34 All-All comparison script and also parser which converts to BAG input format
• Fasta All-All comparison on IU's IBM SP
• A short description of BAG clustering algorithm's output
• Simple Reference to using Clustalw
• Script to create sequence files for BAG generated clusters (Just a poorly written script for now ... no documentation yet)

Tutorials

• CGI Perl
• Matlab
• Quick guide to installing Globus and its accompanying Simple_CA package -- Coming soon

Other Useful Links:

• For students coming into IU

  • Information for students coming into IU - FAQ kinda page

• Working on Unix

  • Setting up your SSH keys

• Latex

  • Latex Template with some often used elements for a typical:PDF/PS / Powerpoint type presentation
  • Simple Latex compilation shell scripts: PDF and PS / HTML (Book style)
  • Hints on Using Latex to produce PDF - Sean Eddy

• Windows XP Tweaks and such...

  • Tweaks for services -- disabling/making manual